Protein List


Summary

Result Statistics

Figure 1: Protein profile heatmap (Cell colour represents the log2(ratio) to the average area across different samples)



Figure 2. The volcano plot for proteins.

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Figure 3. The distribution of feature vector ratio: (a) By quality. (b) By intensity.

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Figure 4. (a) RT shift distribution; (b) M/Z shift distribution.

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Table 1. Result filtration parameters.
Retention time≥0
Retention time≤150
Feature significance≥0
Feature fold change≥1
Quality≥0
Avg. Area≥0E0
Charge≥1
Charge≤10
Confident sample number≥3
With peptide IDtrue
Protein significance≥13
Protein fold change≥2
Significance methodPEAKSQ
Confident unique supports≥1
NormalizationUse TIC
Table 2. Statistics of filtered result.
Features338810
Features with ID157879
Feature vectors22778
Feature vectors with ID22778
Protein groups22
Table 3. Search Parameters
Quantification type: Label free quantification
Mass Error Tolerance: 30.0 ppm
Retention Time Shift Tolerance: 3.0 min
Dependent on PID: 35,42,50,56,90,133,112,277,115,281,118,285,12
1,289,124,293,171,297,174,301,177,305,161,309,165,313,168,317
,201,321,204,325,207,329,210,333,236,337,239,341,244,345,255,
349,263,353,271,357
FDR Threshold: 1%
Samples: 24 samples in 2 groups
: LS10GM LS1GM LS4GM LS6GF
: LS8GF LS12GF MS7GM MS14GM
: MS3GM MS17GF MS18GF MS20GF
: AK16GM AK7GM AK22GM AK11GF
: AK12GF AK13GF BH6GM BH9GM
: BH10GM BH1G1F BH1G2F BH1G4F
Reference Sample: BH1G1F
Training Samples: BH6GM, BH9GM (auto detected)